PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g026710.1
Common NameMTR_2g026710, NF-YB13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YB
Protein Properties Length: 167aa    MW: 17995.2 Da    PI: 5.8379
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g026710.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB186.22.5e-5816111297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      reqdrflPianvsrimkk+lPanakisk+aketvqecvsefisf+t+easdkcq+ekrktingddllwa++tlGfedyveplk+yl+kyre+eg
  Medtr2g026710.1  16 REQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLSKYREMEG 109
                      89******************************************************************************************** PP

            NF-YB  96 ek 97 
                      ek
  Medtr2g026710.1 110 EK 111
                      97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.9E-5611124IPR009072Histone-fold
SuperFamilySSF471139.32E-4318127IPR009072Histone-fold
PfamPF008083.2E-282185IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.8E-214967No hitNo description
PROSITE patternPS0068505268IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.8E-216886No hitNo description
PRINTSPR006151.8E-2187105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAESDNESGG GQTGCREQDR FLPIANVSRI MKKALPANAK ISKEAKETVQ ECVSEFISFI  60
TGEASDKCQK EKRKTINGDD LLWAMTTLGF EDYVEPLKIY LSKYREMEGE KSAMIGRSDQ  120
RDGNVGEGSG GVYGHGVGVP SSMMMMMGHN MYGSGSGSPS SGRSTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-5016106292Transcription factor HapC (Eurofung)
4g92_B4e-5016106292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182860.0JQ918286.1 Medicago truncatula nuclear transcription factor Y subunit B13 (NF-YB13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462945.11e-121nuclear transcription factor Y protein
SwissprotO233101e-71NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLI3TAX11e-121I3TAX1_MEDTR; Nuclear transcription factor Y protein
STRINGGLYMA09G01650.12e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-72nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]